733 research outputs found

    Regulatory motif discovery using PWMs and the architecture of eukaryotic core promoters

    Get PDF

    Magnetic properties of doped Heisenberg chains

    Full text link
    The magnetic susceptibility of systems from a class of integrable models for doped spin-SS Heisenberg chains is calculated in the limit of vanishing magnetic field. For small concentrations xhx_h of the mobile spin-(S−1/2)(S-1/2) charge carriers we find an explicit expression for the contribution of the gapless mode associated to the magnetic degrees of freedom of these holes to the susceptibility which exhibits a singularity for xh→0x_h\to0 for sufficiently large SS. We prove a sum rule for the contributions of the two gapless magnetic modes in the system to the susceptibility which holds for arbitrary hole concentration. This sum rule complements the one for the low temperature specific heat which has been obtained previously.Comment: Latex2e, 22 pp, 3 figures include

    Development of a Sensitive Phospho-p70 S6 Kinase ELISA to Quantify mTOR Proliferation Signal Inhibition

    Get PDF
    Background: Drug blood levels can only serve as a surrogate because of the lack of information on the drug's direct pharmacological effects in the individual patient. Measurement of the mammalian target of rapamycin (mTOR) activity dependent on the phosphorylation status of p70 S6 kinase (p70 S6K) offers a practical way for monitoring pharmacodynamic drug activity, with the potential to better assess the state of immunosuppression in individual patients. Material and Methods: Here, we established a novel in vitro model system by treating Jurkat cells and peripheral blood mononuclear cells with different concentrations of sirolimus after stimulation with phorbol 12-myristate 13-acetate. Results: A dose-dependent reduction of the p70 S6K phosphorylation status was demonstrated by Western blot and a newly established enzyme-linked immunosorbent assay (ELISA). Relative phospho-p70 S6K values from ELISA and relative densities from Western blot analysis in peripheral blood mononuclear cells revealed a strong correlation (Spearman correlation coefficient r(s) = 0.7, P = 0.01). Finally, parallel assays confirmed a sirolimus dose-dependent reduction of cytokine production and cell proliferation in the in vitro model. Conclusions: Pharmacodynamic monitoring of mTOR inhibition with a p70 S6K ELISA could guide mTOR inhibitor immunosuppression therapy toward a more individualized therapy. The usage of this technique now has to be evaluated in a clinical series of patients

    Charge separation in an acceptor–donor–acceptor triad material with a lamellar structure

    Get PDF
    Linking covalently both electron donor and acceptor components is an efficient way to gain thermodynamic control over the formation of well-ordered heterojunction materials suitable for organic photovoltaics. In this context, we attached flexible polymer segments to the termini of a (perylene bisimide)–quaterthiophene–(perylene bisimide) triad. The microphase segregation of the resulting coil-rod-coil architecture served to reliably promote the formation of lamellar phases. The lamellae were oriented vertically relative to the substrate, and they could be laterally aligned by mechanical rubbing, as determined by small and wide angle X-ray scattering, transmission electron microscopy, electron diffraction and AFM. Transient absorption spectroscopy revealed that light absorption was followed by charge separation and that charge recombination was slower in thin films than for solution-phase samples, especially when longer side chains were used. Thus, this study is a first step towards reliable lamellar phase segregation in donor–acceptor materials on the route towards improved materials for organic photovoltaics

    Ideas and perspectives: Allocation of carbon from net primary production in models is inconsistent with observations of the age of respired carbon

    Get PDF
    Carbon allocation in vegetation is an important process in the terrestrial carbon cycle; it determines the fate of photoassimilates, and it has an impact on the time carbon spends in the terrestrial biosphere. Although previous studies have highlighted important conceptual issues in the definition and metrics used to assess carbon allocation, very little emphasis has been placed on the distinction between the allocation of carbon from gross primary production (GPP) and the allocation from net primary production (NPP). An important number of simulation models and conceptual frameworks are based on the concept that C is allocated from NPP, which implies that C is respired immediately after photosynthetic assimilation However, empirical work that estimates the age of respired CO2 from vegetation tissue (foliage, stems, roots) shows that it may take from years to decades to respire previously produced photosynthates. The transit time distribution of carbon in vegetation and ecosystems, a metric that provides an estimate of the age of respired carbon, indicates that vegetation pools respire carbon of a wide range of ages, on timescales that are in conflict with the assumption that autotrophic respiration only consumes recently fixed carbon. In this contribution, we attempt to provide compelling evidence based on recent research on the age of respired carbon and the theory of timescales of carbon in ecosystems, with the aim to promote a change in the predominant paradigm implemented in ecosystem models where carbon allocation is based on NPP. In addition, we highlight some implications for understanding and modeling carbon dynamics in terrestrial ecosystems

    A Conserved GA Element in TATA-Less RNA Polymerase II Promoters

    Get PDF
    Initiation of RNA polymerase (Pol) II transcription requires assembly of the pre-initiation complex (PIC) at the promoter. In the classical view, PIC assembly starts with binding of the TATA box-binding protein (TBP) to the TATA box. However, a TATA box occurs in only 15% of promoters in the yeast Saccharomyces cerevisiae, posing the question how most yeast promoters nucleate PIC assembly. Here we show that one third of all yeast promoters contain a novel conserved DNA element, the GA element (GAE), that generally does not co-occur with the TATA box. The distance of the GAE to the transcription start site (TSS) resembles the distance of the TATA box to the TSS. The TATA-less TMT1 core promoter contains a GAE, recruits TBP, and supports formation of a TBP-TFIIB-DNA-complex. Mutation of the promoter region surrounding the GAE abolishes transcription in vivo and in vitro. A 32-nucleotide promoter region containing the GAE can functionally substitute for the TATA box in a TATA-containing promoter. This identifies the GAE as a conserved promoter element in TATA-less promoters
    • …
    corecore